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How to extract SNPs of Illumina Omniexpress from Denisovan data?

I am looking for a script which can extract the Illumina Omniexpress genotype data from the high quality denisovan genome vcf file. http://cdna.eva.mpg.de/denisova/VCF/.

Thanks

snp neanderthal denisova genome-sequence
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updated by Ram Ram • written by kmrchllpn • kmrchllpn

1 answer

Here is a very similar post to your question: Extracting Genotype Information From Vcf

Also, here's a list of various tools you can use to parse through VCF files to help get the information you need: https://kromozome.wordpress.com/2014/09/09/vcftools/

I hope this helps.

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updated by Ram Ram • written by erictleung erictleung

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