How to get the 3D structure of circular RNA?

Linear RNA maybe easy to get its predictive 3D structure, but circular RNA may not.

I would like to know how to do it. Any suggestions will be appreciate.

sequence

• 2,022 views • link

updated 10.8 years ago by Biostar 380 • | written 10.9 years ago by zhidong.yuan 2

0 answers

No answers yet.

More posts like this

circular RNA analysis workflow
written 4.1 years ago by aminijavad4 1

Hi, I need to analyse circular RNA in RNA-seq data and get circular RNA differentiation expression. I am familiar with bulk RNA-seq data analysis but …
How to calculate the similairty of two protein structures in .pdb file format or how to measure the…
written 5.2 years ago by moxu 51

I am new to the protein structure prediction, so the following question may sound obvious to experts in the field. Let's say a protein has …
How to evaluate the binding affinity of a series of proteins to a specific DNA sequence
written 7.0 years ago by stcatpang 6

Hi everyone! Recently we want to find potential interaction partners to a specific gene. We already get the sequence of its regulatory region (like promoters) …
How to "linearize" or "unfold" a PDB format structure to secondary structure?
written 7.1 years ago by Michael Dondrup 5.6K

Hi all, I need a quick hack for the following problem: I have a protein structure (generated by i-Tasser) in PDB format. I would like …
how to calculate or extract Circular RNA expression via RNA-seq data
written 8.3 years ago by modarzi 18

Hi, Through RNA-seq data set, I extract Circular RNA.Now, I want to know the expression level of Circular RNA. But really I don't have any …
Predicting binding probability of circRNA and miRNA
written 9.3 years ago by ResearchR 12

Dear all, I am working on circular RNA and miRNA. I used the tool DCC to get possible circular RNA candidates from my STAR alignment. …
How to predict the binding sites and possible ligands for docking studies?
written 9.6 years ago by nazriyakhan85 2

Hello, I would like to predict the binding sites and possible ligands of a membrane protein for docking studies. Actually, 3D structure of my target …
Sequence To Structure
written 13.5 years ago by Raygozak 143

Hi, does anyone know a way to generate the 3d linear structure of a protein given the sequence, note that i'm not asking for the …
Docking And Molecular Dynamic Simulation ??
written 13.8 years ago by Dollas Salleh 7

Hi, I'm new in Computational Biology area. Currently I'm working out on predicting the 3D structure of my target protein. For the info, I have …
Who Does Xray Crystallography?
written 14.9 years ago by Andyh 9

I have a protein I would like to get a 3-D structure on, but our group does not normally collaborate with groups that do that …