Has anyone ever used rail-RNA to align their RNA-seq data? How does it compare to TopHat? I just want junctions, and the manual at docs.rail.bio says that's all it outputs if you want.
<p>Hello,</p> <p>I am using HOMER to find enriched known motifs in my differentially expressed gene lists (RNA-seq). I am using the findMotifs.pl tool. I get …
<p>Hello,</p> <p>Does any one know how can I create gene models (GFF files) from RNA-seq reads or alignments ?</p> <p>Inputs: RNA-seq reads and reference genome, …
guess not ;)