Dear All,

Is there any tool/standard method to plot all variation frequencies together in each position of a gene from different population. I have extracted the positions from the VCF files (1000Genome) and need to plot on the gene. I have calculated the frequencies as follows by using vcftools

CHROM   POS     N_ALLELES       N_CHR   {ALLELE:FREQ}
17      64298926        2       1788    G:0.998322      A:0.00167785
17      64298927        2       1788    G:1     T:0
17      64298992        2       1788    A:0.999441      G:0.000559284
17      64299103        2       1788    A:1     G:0
17      64299131        2       1788    C:1     T:0
17      64299150        2       1788    C:1     T:0
17      64299169        2       1788    C:1     G:0
17      64299317        2       1788    G:0.999441      C:0.000559284

Please help me how to plot this for in each position for all variant frequencies