Finding public ChIP-seq data for various tissue types
I would like to learn how better to locate publically available ChIP-seq data.
Specifically, I would like to look for H3K27me3, Ezh2, and Eed ChIP-seq data from brain tissue (amygdala and dorsal raphe) if such exist.
However, if not, I am still very interested in learning more about the most widely used ChIP-seq portals that may provide downloadable data.
Thanks!
1 answer
ftp://ftp.genboree.org/EpigenomeAtlas/ is the roadmap epigenomics ftp and has K27 at least. Browsing is much slower than dl-ing.
• 0 views
•
link
updated
by
Ram
•
written
by
Endre Bakken Stovner
•
written
by
Endre Bakken Stovner
Log in to answer this question.
More posts like this
-
Seeking Guidance on Selecting Control ChIP Sequences for nf-core/chipseq Pipeline
written by mark.pekarsky •
-
Is it acceptable to combine RNA-seq datasets?
written by imraandixon •
-
Ideas to identify unique genes of each brain regions
written by Davy •
-
Indexing pubmed articles by data available?
written by LauferVA
-
Nanopore tutorial for beginners
written by Lila M
-
Ideas Regarding TF regulatory network
written by pixie@bioinfo
-
Exploring H3K27me3 loss in cancer
written by Researcher
-
Splice site usage from RNA-seq data
written by Suicyte •
-
Tissue-specific Histone Mark bam files?
written by epaminonda •
-
Compare ChIP-seq data from various experiments
written by bharath.mh24 •
Roadmap Epigenomics, ENCODE.