Hello, I am working on tomato with varying levels of heat stress (0h, 1h, and 3h)

I have Atac-seq, RNA-seq data (2 replicate each) for all 3 time-points. I also have ChIP-seq data for various Histone marks like H3K27me3, H3K9 Ac, etc. for all 3 time-points

I also have

I wish to have a TF-regulatory network using this data. I would be grateful if I can have some ideas from this group to plan my protocol, in terms of research papers or otherwise.

Thanks