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Gene Regulatory Network (GRN) reconstruction and assessment tools

Hi,

I am looking for tools and algorithms about GRN reconstruction as well as GRN assessment. Some examples are CellNet, ARACNE, TIGRESS, and so on. I wonder if anybody here has any suggestion.

Thank you in advance.

grn-reconstruction cellnet grn-assessment
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updated by Ram Ram • written by Parisa • Parisa

in genepattern (pathway analysis), there are ready toold that only need the input file and assessment part also is in downstream part.

i found NetBenchmark package also doing GRN inference and evaluation on more than 10 methods but i could not figure out that yet. but this package failed to evaluate the results.

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written by zizigolu zizigolu

1 answer

You can construct co-expression networks from your gene expression experiments with several algorithms and methods with InSyBio BioNets (a demo is available here and you can request for a free one month access at info@insybio.com). For more details read the relevant white paper: http://insybio.com/pages/bionets

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updated by Ram Ram • written by k.theofilatos • k.theofilatos

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