Is it possible to submit a query to Haploreg programmatically (without using a browser) and get the output as text file?
I think Pierre Lindenbaum was asking the same question on Twitter...
.@yokofakun @notSoJunkDNA No cmd-line service, but I just put a VCF-formatted dump of the #haploreg database under the "Documentation" tab.
— Luke Ward (@Luke__Ward) June 7, 2013
there was a VCF file indexed with tabix. But I the download area seems to be "access denied" now. You should ask/tweet to @Luke_Ward
Download in process at the moment. Presumable, I would need to calculate my LD from that VCF?