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Online pipeline for MSA and NJ tree generation bootstrap supported
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ClustalX2 guide tree
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Phylogenetic analysis and the inpact of recombination
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MEGA is adding unspecified characters at the end of some sequences during MSA.
written by sandeep.kumar665 •I'm doing MSA of protein sequences in MEGA through MUSCLE and after alignment I'm finding ° at the end of a few sequences. Even after …
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Adding sequences to preexisting MAF alignment
written by Carla •Hi, I was wondering what is best and If what I am doing so far is wrong. First, I was considering following the lastz + …
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Tool: SNP-SIFT Scores using SIFT Sequence tool
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MSA building algorithm
written by ga29qal •Hi guys, I have a questions concerning multiple sequence alignments (msa) building algorithms. Which algorithm is "best", to construct a multiple sequence alignment from a …
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Differences In The Phylogenetic Trees From Protein And Codon Msa
written by Pappu<p>I made MSA of homologous protein sequences by muscle. Next after alignment trimming (removing MSA columns >50% gaps), I built phylogenetic tree by raxml with …
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Novel Strategy For Improving Sequence Alignment
written by Pals<p>I have been involved in modeling proteins that have initial %identity of 22, 26 and 23. I tried to imply a couple of strategies. </p> …