I have strand specific RNA seq data that I would like to view in IGV or a similar genome browser (with fast scrolling/zooming). I am looking for something like the (a) part of this figure (from RNASeqBrowser): 
Where the positive strand is above the line, and negative strand is below the line. At the moment I use IGV and have one track for the positive strand and one track for the negative strand, but this gets confusing when comparing multiple samples.
What I could find is that IGV does not have the ability to do this but the threads that I could find are a few years old, so my questions are:
1. Is it already possible to view strand specific data in IGV like above figure? and if not
2. What is a good browser with fast scroll/zoom speeds that can do this?
•
written
by
Niek De Klein
1 answer
I think this can do what you want: http://goldenhelix.com/GenomeBrowse/
Log in to answer this question.
-
Understanding Gene Set Enrichment Analysis (GSEA) Tools in RNA-Seq
written by Noah E. •
-
Transferring Gene Annotations from Assembly with Large Duplications
written by Charles Warden
-
Tutorial: InsideDNA: How to use GATK and Picard to filter low quality variants?
written by shilparaopradeep •
-
Visualization of ChIP-seq data (mapped reads)
written by Wet&DryImmunology
-
Which Genome Browser Can Show Input Reads And Ip Reads Profile In One Track?
written by chentong.biology •
-
Tutorial: Visualizing Chip-Seq Data Using Ucsc [Bigwig]
written by Sukhi Singh
