Hi everyone, I'm reaching out for some clarity on the ConClave scoring method as described in Philip Clausen's work (https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2336-6). While I understand the general …

Hi!! I have results from a tblastx but I would like to keep aonly the best result. I have this extract: Query= AT3G23790.1 | Symbols: …

I am hoping there is a way to get the E-values for the individual alignments of hits in different frames frames. The two hits below …

During a practice, I used 30 DNA query sequences in equal length (100bp). They are all from human genome. After BLASTing them to the human …

Hi all , I have performed a local protein blast and it gave me an output which contains a lot of duplication . However, I …

Hi guys, I’m trying to set up a COG database using the 2014 updated data (from ftp://ftp.ncbi.nih.gov/pub/COG/COG2014/). As I understand how it works, one needs …

I used BLAST to find the best aligned DNA sequence to my query sequence. The BLAST result shows a number of sequences that it calculated …

<p>Hi all:</p> <p>I am calculating my e-Value for my own BLAST alignment. </p> <p>I used the formulae: e= m<em>n</em>2^-S'</p> <p>where: m = length of the …

<p>Hi all,</p> <p>Is there any script or tool which is able to parse NCBI blast xml output (produced with -m 7 option) ?</p> <p>I want …

<p>In a text file there are numbers. for eg:</p> <blockquote> <p>human 0 1 2 3 4 5 6 7 8 9 10 11 12 13 …