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OrthoMCL issue with BLAST and mySQL
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Interaction calling using contact matrix
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[orthomcl] Proteins with more than one predicted ortholog
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Comparing Blast M8 Outputs
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Orthomcl Outputs Just Inparalogs
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Do You Know A Good Example Of Functionally Divergent Orthologs?
written by Charles B. •<p>Hello,</p> <p>I am looking for an example of orthologs that have functionally diverged (gain or loss of function(s)) but that retain a part of common …
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Interspecies Transition Of Transcription Factor Binding Sites
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Hyphy Vs Codeml
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Orthomcl Pairs
written by jollymrt •<p>I ran orthomclpairs on the similarSequences table and I got intermediate tables with data but no rows were populated in the Ortholog,CoOrtholog or Inparalog tables. …
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Orthomclpairs Doesnt Work
written by User 4041 •Hello everyone, I have done the orthomclLoadBlast step before the orthomclPairs successfully and obtained a SimilarSequences table in the orthomcl database that I created. The …
You should specify your input data set and the command line parameters.