How To Convert Bam To Ped/Map File
Can anyone suggest me how to convert a BAM allignment file to a PED and a MAP file format??
Thank you
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Anjali •
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BAM is an alignment format and does not describe genotypes. You will need to call genotypes on your samples using a tool such as samtools mpileup. The output from that will be VCF format. From the answer to your other related question,
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