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1000 genomes vcf missed a pretty obvious variant: why?
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5.3 years ago
deveaux • 0
United States

This rsid:rs121908769 is not included in the 1000genomes vcf, but...

It actually has 2 out of 5 reads that are calling del TT :

https://gabrowse.appspot.com/#=&readsetId=CMvnhpKTFhDhxZ67u6Da5yM&backend=GOOGLE&location=7%3A117149186

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19 months ago
France/Nantes/Institut du Thorax - INSE…

Read depth = 5 bases : does this meet the quality standards of the 1KG project ? I guess not.

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