pangenome of mycobacterium
Hi everyone
I have to construct a pan genome considering 65 strains of mycobcterium sp., can anyone suggest what language will be more comfortable for this job, R or perl? And please suggest me a rough outline for constructing pangenome.
• 2,133 views
•
link
updated
by
Ram
•
written
by
manasa22.reddy •
•
written
by
manasa22.reddy •
1 answer
Hi If you have draft/close genome you can do it using the LS_BSR pipeline.
Log in to answer this question.
More posts like this
-
Plant diploid genome, phashed, CLR reads, PECAT
written by san96 •
-
Pangenome of plant
written by Bushra Bibi
-
Gene Enrichment analysis with EggNog output
written by JirMan •
-
How to compare variability or calculate p-value in R within same group?
written by Ankit
-
Core genome analysis for viruses
written by Bioinfo •
-
Coordinates for genomic features?
written by Ankit
-
msi sensor for microsatellite instability detection
written by manasa22.reddy •
-
Extracting Codons from a SNP alignment
written by tpaisie
-
How to generate this line diagram?
written by User 6777 •
-
Iterative Mapping And Assembly For Gap Elimination (Images)
written by HG
Kind of a broad question. Have you at all googled? This might help you: http://www.ncbi.nlm.nih.gov/pubmed/25781462