Hi I have multisample vcf out file from Mutect2 and would like to make circos plot showing variants in multiple sample. Any suggestions or directions …

Hi All, I want to estimate heterozygosity by samples from a multisample vcf file. I mapped whole-genome short reads data of many samples to a …

Hello! vcftools can calculate statistics such as pi and Fst using sliding windows. I've noticed that windows in which the alternative allele is fixed are …

Hi all and Merry Christmas! I would like to calculate Fst for some selected SNPs between my own population (the variants came from whole-genome sequencing …

Hi, I have a vcf file composed of multiallelic variants and I'm trying to calculate Fst between populations. Vcftools --weir-fst-pop only calculates fst for biallelic …

Hi to all, I have a vcf file that including multisample. I want to calculate expected heterozygosity for this vcf file by sliding-window approach(40-kb-windows slidingin20-kb-steps). …

How to get the information of total number of homozygous and heterozygous non-reference from a multi sample VCF file? As an example, I want the …

<p>Hello Everyone,</p> <p>I have 2 vcf files, each one contains snps from samples from a single different population. I would like to run fst in …

<p>Hi there, I would like to obtain the Weir &amp; Cockerham Fst for single SNPs from my vcf files for wished populations. I thought to …

I have RNA seq of illumina paired reads mapped to reference genome (bam file) and VCF file from variant calling software. I would like to …