Marmoset Mrna Details Via Ucsc Mysql Database
I currently access the UCSC 'refFlat' table to extract human mRNA details namely ; mRNA name, Start coordinate and End coordinate.
I want the same information regarding the Marmoset mRNAs.
My primary need is to BLAST a sequence segment , get its coordinate and see whether a mRNA is present in the location.
Thanks in advance.
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I believe Marmoset is called calJac3 at UCSC. You could probably access it in the same way as human. So, I'm not sure what your question actually is. Could you clarify?