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Simulation Of Genetic Circuits

Hi: Does anyone knows of any software that could implement simulation of genetic circuits based on plasmids, promoters, ribosomes, and all that stuff? I have found one called SynBioSS, but if anyone has information about other types of softwares it would be nice. Thanks

simulation
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updated by Giovanni M Dall'Olio Giovanni M Dall'Olio • written by Ma Ma

Hi, I mean to be able to tune by a software the different concentrations for example of lacI that acts a repressor of pLac, and try to get probable response measures from genetic circuits. I think that the broad name of this technique is synthetic biology

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written by Ma Ma

3 answers

Have you searched in the Software Summary page in the SBML home website?

There are many tools, for example iBioSim.

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

Synthetic biology is kinda an up and coming field. They have stuff like what you are talking about. http://biobricks.org/ is a good introduction to what it's about.

http://openwetware.org/wiki/Resources has links to various resources.

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written by Damian Kao Damian Kao

There is one called CircuitsDB, but I don't know if it does the things you need: https://biocluster.di.unito.it/circuits/index.php

But I know CellDesigner had a function for entering equations for rates and such: http://celldesigner.org/

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written by Mary Mary

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