This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to search conserved protein domains?

Hi, everyone,

I used SMART website (http://smart.embl-heidelberg.de/smart/set_mode.cgi?NORMAL=1) to search if there exists conserved domains or motif for my aim protein. However, I did not get any information from SMART analysis. I am wondering if there is any other webtool to perform similar analysis? THANKS A LOT in advance.

domain

Thank you venu. Although I got no hits, your site is really useful.

1 answer

If got your question, you can use PSI-BLAST or HMMER

Log in to answer this question.