Enhacers find out with Homer
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Try my tool. It will report enhancers for any human peak file (currently supports hg19) in BED format. It needs at least 20GB RAM though
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Ram
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abhishek.mitra •
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abhishek.mitra •
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As I understand you should tun that command using '-style factor' and also '-typical' - is that what you did?
"If you want findPeaks to output the typical (non-super) enhancers too, specify -typical followed by the desired output file name."