Transform VCF file for Rqtl input for genetic mapping
Hi everyone,
I am trying to find out if there is any tools out there to transform a VCF file to make input file for Rqtl or similar tool.
Basically, I have WGS for RIL population (180 lines) for which I did variant calling using samtools and have a VCF file that I need to parse it to get an input file for linkage/QTL mapping tools such as Rqtl or QTL cartographer. Please suggest if there are any tools. Any help is appreciated.
Thank you.
-Raj
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rajini28m •
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rajini28m •
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Hello rajini28m!
It appears that your post has been cross-posted to another site: http://seqanswers.com/forums/showthread.php?t=61076
This is typically not recommended as it runs the risk of annoying people in both communities.
Hi Pierre,
Oops I did not realize that. Sorry. Thanks for the reply though.
It will not happen again.
Raj