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How can we get names of reads per contig with IDBA-ud?

Hi everyone,

I am using IDBA-ud to assembly reads from an exome sequencing. I would like to access to the name of each read which compose a contig. Is there an option or a way to have this information?

Thank you very much.

idba-ud
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updated by Ram Ram • written by j-blanchard • j-blanchard

1 answer

You can map your reads to the contigs with e.g. bwa.

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written by 5heikki 5heikki

Of course but it would be faster if IDBA-ud give it directly. But if it doesn't I will have to do something like that, yes.

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written by j-blanchard • j-blanchard

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