GOseq returns different number of genes in category for same gene2cat list · Biostar

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GOseq returns different number of genes in category for same gene2cat list

Hi,

I am using GOseq for go term enrichment over 2 strains and 2 conditions. I noticed that the results have something peculiar - or something I am misunderstanding. The results returned from GOseq contains a numInCat column, which I take as number of genes for the given GO category. I expected this to be the same over different comparisons I performed over strains and conditions since gene2cat is the same. However, it differs from comparison to comparison. Could anyone help me understand?

Thanks!

goseq rna-seq

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updated 3.6 years ago by Ram

• written 11.1 years ago by muhittinozdemir •

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