For my RNA-seq project, I have a list of genes in one column and I am trying to associate this list with a second column that has all the biological pathways that each respective gene is involved in. I looked at databases such as PathwaysCommons, but they don't seem to provide a non-network based representation that I can FTP directly into my local computer.
Is there a way to get a list of genes and their respective associated biological pathways? One gene can have many very many pathways that it is known to be involved in. Is there any online utility that I can use to find this kind of information?
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written
by
thorwahl •
1 answer
I suggest that you try and do this by using either:
They offer a GUI that allow you to easily append pathway information to a list of genes.
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written
by
roy.granit
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Think you can download those information through http://www.pathwaycommons.org/pc2/downloads
The GSEA format might be the easiest to work on