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How To Identify Targets of A Transcription Factor for Bos Taurus?

I have a list of transcription factors from a high-throughput experiment for Cow. I would like to know about the probable target genes of these transcription factors.

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updated by andrew.j.skelton73 andrew.j.skelton73 • written by rodbari.zahra • rodbari.zahra

Or more generally, do you currently have experimental data or are you looking to make a prediction from motifs?

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written by Jautis Jautis

I have Expression Data(Micro array). I want interaction between TF and target gene database in Bos tauruse

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written by rodbari.zahra • rodbari.zahra

1 answer

I'd say your best bet is to look here, and look for binding sites based on your probe sequences. http://www.bioconductor.org/help/workflows/gene-regulation-tfbs/

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updated by Ram Ram • written by andrew.j.skelton73 andrew.j.skelton73

I have Agilent ID, then convered to Ensemble ID for Another analysis.I need to one file with Esemble ID,TF, Target gene. with this way I can get this result?

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updated by Ram Ram • written by rodbari.zahra • rodbari.zahra

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