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State of art gene prediction tools for grass genomes

Hi, I'm new to field of gene prediction. Are there any review papers or tutorials talking about the state of art gene prediction tools for grass genomes, like rice, maize and wheat etc. As far as I know, there are some specifications for grass genes, like GC content. Thanks very much.

gene prediction grass genome
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updated by Biostar Biostar • written by chjiao3456 • chjiao3456

2 answers

You could train any decent gene prediction tool with closest relative genomes..
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written by 5heikki 5heikki

Thank you. So do you mean usually there are no specific tools for grass genes prediction?

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written by chjiao3456 • chjiao3456
You could read that paper it is an exellent review. http://www.nature.com/nrg/journal/v13/n5/full/nrg3174.html For that kind of purpose I would look at the MakerP annotation pipeline.
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written by Juke34 Juke34

Thanks, this is a very good review paper. However, I don't know whether this paper includes the latest tools for gene prediction/annotation, since it was published in 2012.

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written by chjiao3456 • chjiao3456

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