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retrieving probeset ID of a gene from affymetrix database or anywhere alse

Hello all,

I have a gene (AtHKT1), how I can retrieve its probeset ID?

Thank you

gene sequence
• 3,737 views • link
updated by Ram Ram • written by zizigolu zizigolu

2 answers

You can create a free account on NetAffx Analysis Center (http://www.affymetrix.com/analysis/index.affx?navMode=cat530006&aId=netaffxNav) and search for the gene there, you can use the gene ID conversion tool provided by DAVID (http://david.abcc.ncifcrf.gov/conversion.jsp), or you can search TAIR as this looks to be an Arabidopsis gene.

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updated by Ram Ram • written by alolex alolex

Thank you

• 0 views • link
updated by Ram Ram • written by zizigolu zizigolu

Go to Biomart

Choose ensemble as database

Choose Homo sapiens as gene dataset

Click filters - input your gene name in 'Input external references ID list'

Click Attributes -> external -> Microarray probes and select your platform.

Click results at the top.

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updated by Ram Ram • written by poisonAlien poisonAlien

Thank you

• 0 views • link
updated by Ram Ram • written by zizigolu zizigolu

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