I have a large tree in newick format, ~2000 all genus entries. I want to view the tree and put on ancestor taxonomy at least to class or order level. I tried to use Archaeopteryx visualization program but it keeps failing saying it cant get information on some but it did work before and crashed just after. Haven't been able to get it since.
Could anyone suggest a software I could use to accomplish this. Thanks.
3 answers
Have a look at http://topiaryexplorer.sourceforge.net/. It's designed for this, although I don't think it's been updated in a little while.
You can make a try with this new tool for phylogenetic tree generation that I have developed. I would like very much to get opinions on its utility and how it could be improved. Please feel free to make any comment directly to my email (it's in the page).
Log in to answer this question.
-
Kraken2 with phylogeny as input (instead of taxonomy)?
written by cjb •
-
Common Newick Trees with "proximities" for use with PhyloGibbs
written by Monika515 •
-
Get phylogenetic tree from abundance table
written by David
-
How to get taxonomic lineage from UniProt with SPARQL
written by laughedelic •
-
how to add/update node id to a tree in Bio::Tree::Tree object
written by sckinta
-
guide tree convert multfurcating to difurcating
written by cara78 •
-
Use NCBI guide tree in Clustalw
written by cara78 •
-
perl, extract every 40th seg but stop after getting 300,000 sequence
written by cara78 •
-
Construct Newick Tree from tab-delimited or csv file of phylogeny, preferably in Python
written by weslfield
-
Synteny Alignment To Phylogenetic Tree Using Mauve
written by agatorano •
