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Extract variability between coordinates
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5.1 years ago
egustavsson • 10
Canada

Hi all,

Could anyone suggest how to extract variability within a range, i.e. candidate regions, from multiple vcf files?

I have exome data from a number of samples, as well as SNP array data, and I'm looking for recessive variability from the exome data within generated runs of homozygosity.

Thanks for your time

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16 months ago
Philadelphia

Tabix can help you if you are looking for variants in a given genomic region (http://samtools.sourceforge.net/tabix.shtml)

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Thanks Ashutosh, tabix will do excatly what Im' looking for.

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Ok great. Moving it to answer.

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