Get bedgraph file from CEL affymetrix file
Hi! I need to get a bed(graph) (or wig) file from some affymetrix CEL files from GEO (GSE28728). I can't find any easy way for this, although it seems like it should be a very common thing to do. I'm really not familiar with microarray analysis though. Maybe someone can give me an advice about it? Any tool is fine for me as long as it works under linux.
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Maybe this old solution by seidel is still valid: How To Convert Cel File To Wig File
Thank you, I've seen it already though. Unfortunately it requires Affy Tiling Array software which only works under Windows as far as I can tell.