PSI BLAST to create PSSM with BLAST+
I would like to generate PSSM in blast+. I can run the program and I have required databases downloaded in my computer (nr protein data). What are the necessary steps and commands.
Thank you
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Ram
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farberak •
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farberak •
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just execute the command psiblast -query myfasta.fasta -db mydb -num_iterations 3 -out_pssm mypssm.smp
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