This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to parse Newick into line format?

If I have a Newick tree file with custom values for branches, how can I parse it into line output, similar to that produced by some Phylip programs:

Between        And            Length
-------        ---            ------
   3             2            0.97597
   2             1            0.39020

And so on for the whole tree

tree-parsing alignment sequence
• 3,192 views • link
updated by Ram Ram • written by seb85il • seb85il

Hi, this was a long time ago, but I have the same question. Did you ever figure it out?

• 0 views • link
written by geshapiro01 • geshapiro01

1 answer

Eventually I just ended up making a custom script that breaks it down, using parentheses as a separator...

• 0 views • link
written by seb85il • seb85il

Log in to answer this question.

More posts like this