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How to visualize a bam file in UCSC Genome Browser

I have a 1.31 GB bam file, is it too big to view in ucsc browser, if it is then what is the alternate solutions

chip-seq
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updated by Ram Ram • written by Azhar • Azhar

3 answers

Use bigwig, for conversion and visualizations, check

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updated by Ram Ram • written by Sukhi Singh Sukhi Singh

You may try IGV to visualize your data. Here is the web link: http://www.broadinstitute.org/igv/

Good luck

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updated by Ram Ram • written by Qi Zhao • Qi Zhao

You can also download the data tracks from UCSC and add it IGV.

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written by fongchunchan • fongchunchan

Try this link: I tried to visualize the bam file in IGV or genome viewer

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updated by Ram Ram • written by jivarajivaraj • jivarajivaraj

How to install IGV veiwer cz it is jnlp file not exe.

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updated by Ram Ram • written by Azhar • Azhar

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