DSK ignores abundance-max

Question

[oiz67311]

Hi everyone!

I try to use dsk to only provide a list of kmers within a specific abundance range.

The -abundance-min parameter works fine, but the -abundance-max parameter does not seem to work.

For example, if I use

./dsk -file somefile -kmer-size 21 -abundance-min 1 -abundance-max 5

the configuration output at the end says:

dsk                                     
        config                                  
            kmer_size                                : 21
            mini_size                                : 8
            solidity_kind                            : sum
            abundance_min                            : 1
            abundance_max                            : -1

I have tested this on version 2.0.2 and 2.0.3.

Cheers and thanks in advance.

Answer 1

[edrezen]

Oh, thanks, this parameter was not well used in dsk.

I just corrected the issue in the new version 2.0.4 you can find here.

[oiz67311]

Thank you very much for your fast support! The new version works fine.