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predicting protein binding regions within LncRNA

Dear members,

I am new to LncRNA resarch.

I aim to identify predicting protein binding regions within LncRNA promoters. I came to know that ENCODE can do this. Does anybody can kindly provide me a tutorial with an example.

Thank you in advance.

Best Regards

Shiva

rna-seq
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updated by Ram Ram • written by mahi_a • mahi_a

1 answer

UCSC has ChIP-seq data for encode TFs, you can enter the co-ordinates of your lncRNA promoter in UCSC browser, and enable All ChIP-seq display options and then see that in which cell line, which TFs binding to your promoter.

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written by Manvendra Singh Manvendra Singh

Thank you very much Manvendra :-)

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updated by Ram Ram • written by mahi_a • mahi_a

You are welcome, :) :)

We are here to help anyways :)

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updated by Ram Ram • written by Manvendra Singh Manvendra Singh

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