Which are the best software-tools/servers for functional annotation of assembled transcript data with thousands of contiqs. I tried BLAST2GO but very slow even with Cloud-BLAST option, another Fastannotator, server is under development from two weeks, I can try TAIR but don't know how to get GO classification graph with TAIR results. Can anyone suggest me software or server for 40,000 sequences and easy for non-bioinformatics person like me. Creating local BLAST database for B2G is not possible for me. I am getting problem regarding XML which is requirement for B2G local.