Dear all, I have a problem with parameters in the software GONE. I need to set two parameters NGEN and NBIN in a parameter file, …

Hello friends. I'm trying to visualize a dotplot using enrichplot package in R for KEGG and GO object created by enrichKEGG and enrichGO function of …

Hi everyone, I'm trying to perform an SVM-RFE feature selection using the `caret` package on R: I have a dataset with 1000 and more features …

Hello, I am using TCGA RNA-Seq data for a neural net method. I have splitted the data to train and test set. how do i …

I have some bacteria dna sequences as a positive training set by some specific function of theirs. My negative training set would be whatever that …

Hi! I have data from paired-end Illumina RNA-Seq in one .fastq file. I want to make comparison of alignment quality for bwa aln and mem …

Hello to everyone, I have a question regarding normalization in microarray data. I would like to normalize my training set using rma. After normalizing my …

<p>Does anyone know how to calculate the Q2 value of the PLSDA model like SIMCA? Is there any R package can do this?</p> <p>Best regards!</p> …

Hi, Does anyone know well about the parameter optimization for loess or smooth.spline? In function loess or smooth.spline, the parameter span (or spar for smooth.spline) …

<p>I used LibSVM to construct a prediction model with setting cross-validation to 5-fold, however, in order to avoid overfitting, an independent test is necessary. </p> …