Gene symbols for Gene ontology

I have about 1200 gene ontology (GO) term enriched for my data. I want to get gene symbols for genes for each GO term enriched. Is there any r package which will solve this problem easily? Your help will be appreciated.

Saj

gene

• 2,606 views • link

written 11.4 years ago by saj.a •

1 answer

Yes, biomaRt. Search this site for numerous questions and answers about how to use it.

• 0 views • link

written 11.4 years ago by Neilfws

More posts like this

Help with R code to get a unique list
written 4.7 years ago by Space_Life •

Hi, I have gene ontology data that looks like this (sample data). I manually downloaded the gene ontology data from the Uniprot website. ![Data view][1] …
Is there a way to do GO terms enrichment analysis and keep track of gene symbols?
written 5.1 years ago by DN99 •

I've got 2 lists of HGNC gene symbols (1 target gene list, 1 list of background genes) that I run in GOfuncR package using the …
Finding gene ontology terms for a list of genes
written 6.0 years ago by evelyn

Hello, I have done a gene enrichment analysis for a list of 2000 genes using PANTHER where 300 genes were not mapped. I have got …
Is there a way to get the name or IDs of genes with the goseq table?
written 7.6 years ago by unawaz •

Hi all, I've performed a GO enrichment analysis using goseq. The output of ``goseq()`` tells you the enriched categories with how many significant genes are …
How to get list of all GO terms in each ontology
written 10.5 years ago by sayonidas03

Hi, I want to get lists of all GO terms in each ontology for the a GO release. The GO consortium releases .obo file for …
how to download sequences of gene product associated with certain GO term
written 11.6 years ago by sckinta

Hi In Gene Ontology, we find a certain GO term of interest. When looking into the GO term, I found more 10000 gene product associations. …
Get All Gene Ontology (Molecular Function) Parents For A Go Term Using Perl
written 12.8 years ago by sayonidas03

Hi, I would be very grateful to you if anyone can point me towards the answer as to how to get all parent GO …
How To Retrieve All Go_Bp Terms At Level 5 As Well As Their Annotated Genes
written 13.1 years ago by pkdavidsen •

Dear list, I'm looking for a way to get the names of all Gene Ontology terms for Biological Processes at level 5 as well as …
Biomart To Go Ontology Terms Using R
written 13.4 years ago by APJ •

Hi, I want to get all the related ensembl gene ids for Gene Ontology term "mouse Embryonic development" . I know to get the Ids …
How Can I Compare Enriched/Depleted Go Terms Between Genelists?
written 15.7 years ago by Aaron Statham

So I'm analysing human ChIP-seq data, and have made genelists of genes with enrichment at their promoters in two samples - each sample has about …