Hi,
Is there anyway I can map multiple gene or metabolite expression values (in color code) on genes and/or metabolites belonging to a particular KEGG pathway?
I've a 3 point time series data , so ideally I'll be able to color each node of interest in three different nonoverlapping sector/band of colors.
Thanks
2 answers
Looks like Paintomics can do it:
Hello Painomics is not working lately, can you suggest something else?
Thanks
I tried Paintomics today with some of the example files: it appears to work correctly. However, I didn't try with any of my own files. Alternatively, you can have a look at "Vanted" which seems to have some very nice features.
Thank you very much
Polly (http://elucidata.io/polly) has a tool called MetScape which can overlay day on cannonical KEGG pathways and colour them as well as show their differential expression and intensities. Helps me avoid the hassle of using any coding language all together. It can even directly go from the raw files to visualisations. This might be useful for you. Attaching a screenshot of the MetScape dashboard.
Log in to answer this question.
-
Are individual-mouse-based statistical tests possible with CellChat?
written by omer.shomrat •
-
Trouble Adding Log Fold Changes to KEGG Pathway Visualization
written by ramirj49 •
-
KEGG pathway gene lists differ between sources
written by aedan.r •
-
Pathway Analysis Help
written by cado •
-
What's your preferred pathway enrichment analysis tool after DEG analysis and why?
written by unawaz •
-
Analyze network clusters with not much biological information
written by The Last Word
-
What kind of ANOVA is suitable for this kind of problem?
written by The
-
Missing Kegg Pathway Diagram for Prostaglandin E1
written by The
-
Software For Determining Pathway Differential Expression For Annotated Ngs Data?
written by JacobS
-
Valid Visualizations Of Significant Analysis Of Microarray Data Followed By Pathway Enrichment Anal…
written by user1409015 •
Polly (http://elucidata.io/polly) has a tool called MetScape which can overlay day on cannonical KEGG pathways and colour them as well as show their differential expression and intensities. Helps me avoid the hassle of using any coding language all together. It can even directly go from the raw files to visualisations. This might be useful for you. Attaching a screenshot of the MetScape dashboard.