Thanks I am trying it.
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Hello everyone,
I am looking for an elegant way, may be awk, to do this :
I have a bed file A with locations, I want for each line to grab other locations that are located in 500kb downstream and upstream and then print the line from file 1 with every information found in file 2
Before going into perl loops I wanted to know if this is easily done with awk ?
Thanks
Rad
maybe windowBed from the BEDTools package will do the trick?
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