Case and control in microarray/RNA-seq analysis
Hi, Can I use the case samples from a study and the control samples from another study in microarray/RNA-seq analysis? (specially for cross-study analysis with Bioconductor RankProd R package)
Thanks.
• 2,161 views
•
link
updated
by
Ram
•
written
by
mahdijalili •
•
written
by
mahdijalili •
1 answer
If they are stable cell lines then I believe Yes, you can use it but if they are patient materials then I doubt.
All you need is robust normalization and RankProd would remove False discoveries., after that cluster them to see if they look different
• 0 views
•
link
updated
by
Ram
•
written
by
Manvendra Singh
•
written
by
Manvendra Singh
Log in to answer this question.
More posts like this
-
Combining Microarray and RNA-Seq datasets visualization and comparison
written by mohammedtoufiq91
-
Problem in hierarchical clustering
written by Calangoa •
-
Differential expression analysis of 3D-oligo chip in R
written by Calangoa •
-
How to integrate multiple data sets from microarray platform prior meta-analysis?
written by rice.researcher
-
Can I do eqtl mapping combining RNA-seq and Microarray data?
written by Tao
-
Removing batch effects from RPKM data
written by AB
-
A lot of differentially expressed genes
written by mahdijalili •
-
Deseq2 Etc. Unequal Sample Sizes
written by Phil S.
-
Limma For Rna-Seq Analysis
written by narges •
-
Rankprod Doubt
written by teresa.casserras •
