Biopython: ImportError: No module named TreeConstruction
Hi to all! Someone knows why I get the following error?
>>> from Bio.Phylo.TreeConstruction import DistanceCalculator, DistanceTreeConstructor
Traceback (most recent call last):
File "<pyshell#6>", line 1, in <module>
import Bio.Phylo.TreeConstruction
ImportError: No module named TreeConstruction
And also:
>>> from Bio.Phylo.Consensus import *
Traceback (most recent call last):
File "<pyshell#9>", line 1, in <module>
from Bio.Phylo.Consensus import *
ImportError: No module named Consensus
Thanks to all for you time =)
2 answers
Which version of BioPython are you using ? You can check version:
python -c 'import Bio; print Bio.__version__'
python -c 'from Bio.Phylo.TreeConstruction import DistanceCalculator, DistanceTreeConstructor'
is working in BioPython 1.65.
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by
Ram
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written
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GouthamAtla
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written
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GouthamAtla
Ok. Fixed!
The problem was that in the python IDLE, the version of biopython was 1.63, whereas the code
>>>from Bio.Phylo.TreeConstruction import DistanceCalculator, DistanceTreeConstructor
works nice for version 1.65. So, the solution was delete the folder where biopython 1.63 was installed and download and later (re)install the biopython 1.65.
Good to know it works now. :)
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GouthamAtla
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