SHAPEIT output file confusion

I have carried out SHAPEIT to phase some haplotypes. The output files from SHAPEIT are .haps and .sample. SHAPEIT mentions as HAPS/SAMPLE file (seen here: http://www.shapeit.fr/pages/m02_formats/hapssample.html) which I need in order to carry out other bioinformatic techniques.

Is there a way to create this file from the ones I already have? I have no idea how this file could be created?

snp haplotypes shapeit

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updated 4.2 years ago by Ram

• written 11.4 years ago by j.a.yearsley •

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