Thanks a lot. But still looks like a little bit far away compared with sample figure.
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I suppose they have used a vectorial drawing software (see inkscape or adobe illustrator) to merge the figures generated by another tool drawings the chromosomes (e.g: Drawing Chromosome Ideograms With Data , http://bioinformatics.oxfordjournals.org/content/23/21/2945 , etc... )
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Can you please add a reference to the paper with this figure ?