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Tool for predicting RNA binding protein

Hi,

I have a eukaryotic transcriptome of non-model oragnism assembled using de novo approach with Trinity. I would like find the possible RNA-binding proteins for the transcripts. Is there any tool available for predicting the possible binding proteins apart from RBPmap.

Kindly Guide me

rna-seq rna-binding-proteins
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updated by Ram Ram • written by EVR EVR

2 answers

Maybe you could take a look at this:

RBPmap: a web server for mapping binding sites of RNA-binding proteins

• 1 views • link
written by dago dago

Thank Dago, I like RBAPmap server but I would like output only the transcript_ids and their corresponding binidng protein but in RBP outputs everything inluding th th huge list of possbile motifs and their score which I dont require.

• 1 views • link
written by EVR EVR

I did not read that ypu wrote "aprt from RBPmap". Sorry

• 1 views • link
written by dago dago

http://rnabinding.com/RBPPred.html

• 0 views • link
written by liushiyong • liushiyong

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