Are these steps correct? Galaxy
I have aligned NGS six runs of a sample using BWA (galaxy platform). Then I merged them into one BAM file. Next I sliced the region of interest using SliceBAM in BED tools. After that I merged sequences in the resulting file using Merge command in Operate on Genomic Intervals. So the final result is a BED file. How can I convert this BED file into a FASTA file?
1 answer
I don't think you can do it in Galaxy but you can convert with bedtools getfasta
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Ram
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marina.v.yurieva
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marina.v.yurieva
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