Biostar Beta. Not for public use.
R package for Bayesian phylogenetics
0
Entering edit mode
3.2 years ago
confusedious • 420
Australia

I am currently on the hunt for a good R package for performing BI phylogenetics. I use 'phangorn' for MP and ML and I am very happy with this package, but would like to produce some BI trees for the sake of comparison.

Any advice would be appreciated.

phylogenetics R • 2.1k views
ADD COMMENTlink
1
Entering edit mode
4.8 years ago
David W 4.7k
New Zealand

There aren't really any:

http://cran.r-project.org/web/views/Phylogenetics.html

R is great for many things, by MCMC is not one of them, so I doubt anyone will be write one :)

ADD COMMENTlink
0
Entering edit mode

Ah, such a shame. 'Phangorn' has a great tree comparison tool and I hoped to do some three way comparisons between a method I'm working on, ML and BI. I can do BI with the 'MrBayes' plugin in 'Geneious' so I guess I'll just do that and then read in a newick of the resultant tree to R.

Thank you for the reply.

ADD REPLYlink

Login before adding your answer.

Similar Posts
Loading Similar Posts
Powered by the version 2.3