Identifying genes based on EXCAVATOR chromosomal coordinates
This seems like it should be a very simple task but I am having trouble with it.
I have Copy Number Variant (CNV) results from EXCAVATOR. The output text files have chromosomal coordinates (chromosome #, start, end) for areas with changes in copy number. I want to identify any genes that may be associated with these coordinates. I am using org.Hs.eg.db, and was sent this page as a reference, but I am having trouble understanding how to use these two to simply feed in a list of coordinates and get a list of genes found there. Suggestions? Any ideas would be appreciated.
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