[solved] CheckM error while testing
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Entering edit mode
9.3 years ago
dago ★ 2.8k

I downloaded and installed the program and its dependencies according with the manual.

I checked the capacity of my PC (> 40 Gb memory).

I try then to run the test as suggested

checkm test ~/checkm_test_results

But the program return an error. I think there is an issue with the call to hmmer. But I did not manage to figure out which one.

Any idea how could I fix this?


EDIT

the problem was that in my PATH there was hmmer 2.4. Instead CheckM need >= 3.1b1. Changing that the program worked perfectly.

CheckM software error genome • 1.8k views
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