which software/program is suitable for visualization of PHASE out put files?

which software/program is suitable for visualization of haplotypes generated by PHASE program?

phase haplotype population genetics

• 2,040 views • link

written 11.6 years ago by evo_genomics 6

0 answers

No answers yet.

More posts like this

Determination of haplotypes based on genotype data of 2 SNPs
written 7.6 years ago by Apprentice 19

Hi. I would like to determine haplotypes based on genotype data of 100 patients with 2 SNPs. I know that PHASE software can determine haplotypes …
Case-control phased Haplotype logistic regression on SPSS
written 8.2 years ago by Guilherme 4

I have phased haplotypes based on 13 SNPs, which generated 17 unique haplotypes on my case-control data. I've done the logistic regression association test on …
Software for Tree Visualization
written 9.3 years ago by l.souza 8

What is the best bioinformatic software for visualization of trees generated by RAxML?
What if I break my VCF file into small VCF files and then generate Haplotype indivually and merge i…
written 10.4 years ago by Being Bioinformatician 27

have VCf file which contain 1500 SNPs. Due to computational limitation , it is not possible for generating Haplotypes using PHASE program. What if I …
Phasing X chromosome variants using shapeit2
written 10.6 years ago by rubic 27

Hi, I'm trying to phase X chromosome variants for several individuals using shapeit2 using the 1000 Genomes Project Phase3 chrX haplotypes as a reference set. …
Speed up PHASE software for haplotype inference
written 10.7 years ago by kshitijtayal 4

I am a Bioinformatician and recently stuck in a problem which requires some scripting to speed up my process. We have a software called PHASE …
Forum: HAPLOTYPES SOFTWARES interpretation
written 11.7 years ago by sabrinedhouioui 0

Hello, I used two software tools to analyze haplotypes: haploview and phase. I found positive results with the Phase software but not with the Haploview …
HAPLOTYPES SOFTWARES interpretation
written 11.7 years ago by sabrinedhouioui 0

Hello, I used two software tools to analyze haplotypes: haploview and phase. I found positive results with the Phase software but not with the Haploview …
Calculating association with outcome variable and Phased Haplotypes
written 12.2 years ago by viavialin 7

I am trying to determine association between a set of haplotypes (2 or 3 marker SNPs) with a clinical outcome. I have phased the haplotypes …
Haplotype Vs Multilocus Test
written 13.5 years ago by Varun 3

<p>Hello!</p> <p>I've been looking at association tests for groups (2 or 3) SNPs. Is there a difference between haplotypic and multi-locus association test ? The …